IL_8EYQ_021

3D structure

PDB id

8EYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA_h44_inactive_conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EYQ_021 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1031

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8EYQ|1|A|U|409
8EYQ|1|A|G|410
8EYQ|1|A|A|411
8EYQ|1|A|A|412
8EYQ|1|A|G|413
8EYQ|1|A|A|414
8EYQ|1|A|A|415
8EYQ|1|A|G|416
*
8EYQ|1|A|U|427
8EYQ|1|A|G|428
8EYQ|1|A|U|429
8EYQ|1|A|A|430
8EYQ|1|A|A|431
8EYQ|1|A|A|432
8EYQ|1|A|G|433

Current chains

Chain A

16S_rRNA

Nearby chains

Chain D

30S ribosomal protein S4