IL_8EYT_021

3D structure

PDB id

8EYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA+KsgA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EYT_021 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0907

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8EYT|1|A|U|409
8EYT|1|A|G|410
8EYT|1|A|A|411
8EYT|1|A|A|412
8EYT|1|A|G|413
8EYT|1|A|A|414
8EYT|1|A|A|415
8EYT|1|A|G|416
*
8EYT|1|A|U|427
8EYT|1|A|G|428
8EYT|1|A|U|429
8EYT|1|A|A|430
8EYT|1|A|A|431
8EYT|1|A|A|432
8EYT|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4