IL_8EYT_045

3D structure

PDB id

8EYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA+KsgA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUU*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EYT_045 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3365

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8EYT|1|A|G|1006
8EYT|1|A|U|1007
8EYT|1|A|U|1008
8EYT|1|A|U|1009
*
8EYT|1|A|G|1020
8EYT|1|A|A|1021
8EYT|1|A|A|1022
8EYT|1|A|U|1023

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14