IL_8F4O_004
3D structure
- PDB id
- 8F4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Apo structure of the TPP riboswitch aptamer domain
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAUCU*AGCGUA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8F4O|1|A|U|59
8F4O|1|A|G|60
8F4O|1|A|A|61
8F4O|1|A|U|62
8F4O|1|A|C|63
8F4O|1|A|U|64
*
8F4O|1|A|A|75
8F4O|1|A|G|76
8F4O|1|A|C|77
8F4O|1|A|G|78
8F4O|1|A|U|79
8F4O|1|A|A|80
Current chains
- Chain A
- TPP riboswitch aptamer domain
Nearby chains
- Chain B
- TPP riboswitch (THI element)
Coloring options: