IL_8F5G_004

3D structure

PDB id

8F5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

NusG-RNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCU*AC

Length

5 nucleotides

Bulged bases

8F5G|1|E|C|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8F5G_004 not in the Motif Atlas

Geometric match to IL_8F5G_002

Geometric discrepancy: 0.0469

The information below is about IL_8F5G_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8F5G|1|E|G|8
8F5G|1|E|C|9
8F5G|1|E|U|10
*
8F5G|1|E|A|19
8F5G|1|E|C|20

Current chains

Chain E

RNA

Nearby chains

Chain A

Transcription termination/antitermination protein NusG

Chain B

Transcription termination/antitermination protein NusG