IL_8FC1_083

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC1_083 not in the Motif Atlas

Homologous match to IL_7RQB_085

Geometric discrepancy: 0.1306

The information below is about IL_7RQB_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC1|1|1A|G|2110
8FC1|1|1A|C|2111
8FC1|1|1A|G|2112
8FC1|1|1A|U|2113
8FC1|1|1A|A|2114
8FC1|1|1A|G|2115
8FC1|1|1A|G|2116
8FC1|1|1A|A|2117
8FC1|1|1A|U|2118
8FC1|1|1A|A|2119
8FC1|1|1A|G|2120
*
8FC1|1|1A|C|2178
8FC1|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains