3D structure

PDB id
8FC2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
UGCGAAC*GGAGGUAUA
Length
16 nucleotides
Bulged bases
8FC2|1|2A|G|1801, 8FC2|1|2A|G|1816, 8FC2|1|2A|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC2_243 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.0408
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

8FC2|1|2A|U|1798
8FC2|1|2A|G|1799
8FC2|1|2A|C|1800
8FC2|1|2A|G|1801
8FC2|1|2A|A|1802
8FC2|1|2A|A|1803
8FC2|1|2A|C|1804
*
8FC2|1|2A|G|1813
8FC2|1|2A|G|1814
8FC2|1|2A|A|1815
8FC2|1|2A|G|1816
8FC2|1|2A|G|1817
8FC2|1|2A|U|1818
8FC2|1|2A|A|1819
8FC2|1|2A|U|1820
8FC2|1|2A|A|1821

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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