IL_8FC2_250

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

8FC2|1|2A|A|1938, 8FC2|1|2A|C|1941, 8FC2|1|2A|U|1944, 8FC2|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC2_250 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.0592

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC2|1|2A|C|1934
8FC2|1|2A|G|1935
8FC2|1|2A|A|1936
8FC2|1|2A|A|1937
8FC2|1|2A|A|1938
8FC2|1|2A|5MU|1939
8FC2|1|2A|U|1940
8FC2|1|2A|C|1941
8FC2|1|2A|5MC|1942
8FC2|1|2A|U|1943
8FC2|1|2A|U|1944
8FC2|1|2A|G|1945
*
8FC2|1|2A|C|1961
8FC2|1|2A|5MC|1962
8FC2|1|2A|U|1963
8FC2|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA