IL_8FC2_354

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC2_354 not in the Motif Atlas

Geometric match to IL_8C3A_059

Geometric discrepancy: 0.369

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8FC2|1|1a|C|656
8FC2|1|1a|G|657
8FC2|1|1a|G|658
*
8FC2|1|1a|C|747
8FC2|1|1a|C|748
8FC2|1|1a|C|749
8FC2|1|1a|G|750

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1o

30S ribosomal protein S15