IL_8FC3_044

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUGG*CCAUC

Length

10 nucleotides

Bulged bases

8FC3|1|1A|U|1061, 8FC3|1|1A|C|1076

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC3_044 not in the Motif Atlas

Homologous match to IL_7RQB_043

Geometric discrepancy: 0.252

The information below is about IL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC3|1|1A|G|1059
8FC3|1|1A|U|1060
8FC3|1|1A|U|1061
8FC3|1|1A|G|1062
8FC3|1|1A|G|1063
*
8FC3|1|1A|C|1075
8FC3|1|1A|C|1076
8FC3|1|1A|A|1077
8FC3|1|1A|U|1078
8FC3|1|1A|C|1079

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25