IL_8FC3_133

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

8FC3|1|1a|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC3_133 not in the Motif Atlas

Homologous match to IL_5J7L_017

Geometric discrepancy: 0.0936

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8FC3|1|1a|U|367
8FC3|1|1a|U|368
8FC3|1|1a|C|369
*
8FC3|1|1a|G|392
8FC3|1|1a|A|393

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16