IL_8FC3_222

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGA*UUUAAAGAGUGCGUAAUAGCUCAC

Length

27 nucleotides

Bulged bases

8FC3|1|2A|U|1083, 8FC3|1|2A|A|1088, 8FC3|1|2A|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC3|1|2A|G|1055
8FC3|1|2A|G|1056
8FC3|1|2A|A|1057
*
8FC3|1|2A|U|1081
8FC3|1|2A|U|1082
8FC3|1|2A|U|1083
8FC3|1|2A|A|1084
8FC3|1|2A|A|1085
8FC3|1|2A|A|1086
8FC3|1|2A|G|1087
8FC3|1|2A|A|1088
8FC3|1|2A|G|1089
8FC3|1|2A|U|1090
8FC3|1|2A|G|1091
8FC3|1|2A|C|1092
8FC3|1|2A|G|1093
8FC3|1|2A|U|1094
8FC3|1|2A|A|1095
8FC3|1|2A|A|1096
8FC3|1|2A|U|1097
8FC3|1|2A|A|1098
8FC3|1|2A|G|1099
8FC3|1|2A|C|1100
8FC3|1|2A|U|1101
8FC3|1|2A|C|1102
8FC3|1|2A|A|1103
8FC3|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2Q

50S ribosomal protein L16