3D structure

PDB id
8FC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CUC*GCGAG
Length
8 nucleotides
Bulged bases
8FC3|1|2A|G|2576, 8FC3|1|2A|A|2577
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC3_279 not in the Motif Atlas
Geometric match to IL_7RQB_097
Geometric discrepancy: 0.054
The information below is about IL_7RQB_097
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_90933.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
11

Unit IDs

8FC3|1|2A|C|2510
8FC3|1|2A|U|2511
8FC3|1|2A|C|2512
*
8FC3|1|2A|G|2574
8FC3|1|2A|C|2575
8FC3|1|2A|G|2576
8FC3|1|2A|A|2577
8FC3|1|2A|G|2578

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L32
Chain 2E
50S ribosomal protein L3

Coloring options:


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