IL_8FC3_347

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC3_347 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2721

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8FC3|1|2a|C|1259
8FC3|1|2a|C|1260
8FC3|1|2a|A|1261
8FC3|1|2a|C|1262
*
8FC3|1|2a|G|1273
8FC3|1|2a|G|1274
8FC3|1|2a|A|1275
8FC3|1|2a|G|1276

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2u

30S ribosomal protein Thx