IL_8FC4_186

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC4_186 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0454

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8FC4|1|2A|U|239
8FC4|1|2A|G|240
8FC4|1|2A|A|241
8FC4|1|2A|G|242
8FC4|1|2A|U|243
8FC4|1|2A|A|244
8FC4|1|2A|G|245
*
8FC4|1|2A|C|253
8FC4|1|2A|G|254
8FC4|1|2A|A|255
8FC4|1|2A|A|256
8FC4|1|2A|A|257
8FC4|1|2A|G|258

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15