IL_8FC4_255

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

8FC4|1|2A|A|1938, 8FC4|1|2A|C|1941, 8FC4|1|2A|U|1944, 8FC4|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC4_255 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.0476

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC4|1|2A|C|1934
8FC4|1|2A|G|1935
8FC4|1|2A|A|1936
8FC4|1|2A|A|1937
8FC4|1|2A|A|1938
8FC4|1|2A|5MU|1939
8FC4|1|2A|U|1940
8FC4|1|2A|C|1941
8FC4|1|2A|5MC|1942
8FC4|1|2A|U|1943
8FC4|1|2A|U|1944
8FC4|1|2A|G|1945
*
8FC4|1|2A|C|1961
8FC4|1|2A|5MC|1962
8FC4|1|2A|U|1963
8FC4|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA