IL_8FC5_039
3D structure
- PDB id
- 8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.65 Å
Loop
- Sequence
- CUAAGUG*CUUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8FC5|1|1A|U|1142, 8FC5|1|1A|A|1143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FC5_039 not in the Motif Atlas
- Geometric match to IL_7RQB_039
- Geometric discrepancy: 0.0275
- The information below is about IL_7RQB_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.3
- Basepair signature
- cWW-cSH-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
8FC5|1|1A|C|1018
8FC5|1|1A|U|1019
8FC5|1|1A|A|1020
8FC5|1|1A|A|1021
8FC5|1|1A|G|1022
8FC5|1|1A|U|1023
8FC5|1|1A|G|1024
*
8FC5|1|1A|C|1140
8FC5|1|1A|U|1141
8FC5|1|1A|U|1142
8FC5|1|1A|A|1142|||A
8FC5|1|1A|A|1143
8FC5|1|1A|G|1144
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1H
- 50S ribosomal protein L6
- Chain 1N
- 50S ribosomal protein L13
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