IL_8FC5_067

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

8FC5|1|1A|G|1801, 8FC5|1|1A|G|1816, 8FC5|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC5_067 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0216

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8FC5|1|1A|U|1798
8FC5|1|1A|G|1799
8FC5|1|1A|C|1800
8FC5|1|1A|G|1801
8FC5|1|1A|A|1802
8FC5|1|1A|A|1803
8FC5|1|1A|C|1804
*
8FC5|1|1A|G|1813
8FC5|1|1A|G|1814
8FC5|1|1A|A|1815
8FC5|1|1A|G|1816
8FC5|1|1A|G|1817
8FC5|1|1A|U|1818
8FC5|1|1A|A|1819
8FC5|1|1A|U|1820
8FC5|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA