3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
CGC*GGAG
Length
7 nucleotides
Bulged bases
8FC5|1|2A|G|932
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC5_197 not in the Motif Atlas
Geometric match to IL_7RQB_025
Geometric discrepancy: 0.0725
The information below is about IL_7RQB_025
Detailed Annotation
Intercalated cWW
Broad Annotation
Intercalated cWW
Motif group
IL_52767.4
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

8FC5|1|2A|C|844
8FC5|1|2A|G|845
8FC5|1|2A|C|846
*
8FC5|1|2A|G|931
8FC5|1|2A|G|932
8FC5|1|2A|A|933
8FC5|1|2A|G|934

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 23
50S ribosomal protein L30

Coloring options:


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