IL_8FC5_213

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

8FC5|1|2A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC5_213 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.2962

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8FC5|1|2A|C|1043
8FC5|1|2A|G|1044
8FC5|1|2A|A|1045
8FC5|1|2A|A|1046
8FC5|1|2A|G|1047
8FC5|1|2A|A|1048
8FC5|1|2A|C|1049
8FC5|1|2A|A|1050
8FC5|1|2A|G|1051
*
8FC5|1|2A|U|1108
8FC5|1|2A|C|1109
8FC5|1|2A|G|1110
8FC5|1|2A|A|1111
8FC5|1|2A|G|1112

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6