3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
UUC*GA
Length
5 nucleotides
Bulged bases
8FC5|1|2a|U|368
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC5_300 not in the Motif Atlas
Homologous match to IL_4LFB_014
Geometric discrepancy: 0.1009
The information below is about IL_4LFB_014
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

8FC5|1|2a|U|367
8FC5|1|2a|U|368
8FC5|1|2a|C|369
*
8FC5|1|2a|G|392
8FC5|1|2a|A|393

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2p
30S ribosomal protein S16

Coloring options:


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