IL_8FC5_303

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC5_303 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1056

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8FC5|1|2a|G|409
8FC5|1|2a|G|410
8FC5|1|2a|A|411
8FC5|1|2a|A|412
8FC5|1|2a|G|413
8FC5|1|2a|A|414
8FC5|1|2a|A|415
8FC5|1|2a|G|416
*
8FC5|1|2a|U|427
8FC5|1|2a|G|428
8FC5|1|2a|U|429
8FC5|1|2a|A|430
8FC5|1|2a|A|431
8FC5|1|2a|A|432
8FC5|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4