IL_8FC5_364

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUGUGAACC*GGGGAG

Length

15 nucleotides

Bulged bases

8FC5|1|2A|G|2131, 8FC5|1|2A|U|2132, 8FC5|1|2A|A|2134, 8FC5|1|2A|A|2135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC5|1|2A|C|2129
8FC5|1|2A|U|2130
8FC5|1|2A|G|2131
8FC5|1|2A|U|2132
8FC5|1|2A|G|2133
8FC5|1|2A|A|2134
8FC5|1|2A|A|2135
8FC5|1|2A|C|2136
8FC5|1|2A|C|2137
*
8FC5|1|2A|G|2154
8FC5|1|2A|G|2155
8FC5|1|2A|G|2156
8FC5|1|2A|G|2157
8FC5|1|2A|A|2158
8FC5|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains