IL_8FC6_219

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GGA*UUUAAAGAGUGCGUAAUAGCUCAC

Length

27 nucleotides

Bulged bases

8FC6|1|2A|U|1083, 8FC6|1|2A|A|1088, 8FC6|1|2A|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC6|1|2A|G|1055
8FC6|1|2A|G|1056
8FC6|1|2A|A|1057
*
8FC6|1|2A|U|1081
8FC6|1|2A|U|1082
8FC6|1|2A|U|1083
8FC6|1|2A|A|1084
8FC6|1|2A|A|1085
8FC6|1|2A|A|1086
8FC6|1|2A|G|1087
8FC6|1|2A|A|1088
8FC6|1|2A|G|1089
8FC6|1|2A|U|1090
8FC6|1|2A|G|1091
8FC6|1|2A|C|1092
8FC6|1|2A|G|1093
8FC6|1|2A|U|1094
8FC6|1|2A|A|1095
8FC6|1|2A|A|1096
8FC6|1|2A|U|1097
8FC6|1|2A|A|1098
8FC6|1|2A|G|1099
8FC6|1|2A|C|1100
8FC6|1|2A|U|1101
8FC6|1|2A|C|1102
8FC6|1|2A|A|1103
8FC6|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2Q

50S ribosomal protein L16