IL_8FIZ_009

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_009 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1625

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8FIZ|1|AA|C|132
8FIZ|1|AA|U|133
8FIZ|1|AA|G|134
8FIZ|1|AA|C|135
8FIZ|1|AA|C|136
*
8FIZ|1|AA|G|227
8FIZ|1|AA|A|228
8FIZ|1|AA|U|229
8FIZ|1|AA|G|230

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S20

Chain AO

30S ribosomal protein S16