IL_8FIZ_010

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUG*CAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_010 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1979

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8FIZ|1|AA|G|138
8FIZ|1|AA|A|139
8FIZ|1|AA|U|140
8FIZ|1|AA|G|141
*
8FIZ|1|AA|C|222
8FIZ|1|AA|A|223
8FIZ|1|AA|U|224
8FIZ|1|AA|C|225

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S20

Chain AO

30S ribosomal protein S16