IL_8FIZ_020

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0976

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8FIZ|1|AA|U|409
8FIZ|1|AA|G|410
8FIZ|1|AA|A|411
8FIZ|1|AA|A|412
8FIZ|1|AA|G|413
8FIZ|1|AA|A|414
8FIZ|1|AA|A|415
8FIZ|1|AA|G|416
*
8FIZ|1|AA|U|427
8FIZ|1|AA|G|428
8FIZ|1|AA|U|429
8FIZ|1|AA|A|430
8FIZ|1|AA|A|431
8FIZ|1|AA|A|432
8FIZ|1|AA|G|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S4