IL_8FIZ_022

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8FIZ|1|AA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1238

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8FIZ|1|AA|G|446
8FIZ|1|AA|G|447
8FIZ|1|AA|A|448
8FIZ|1|AA|G|449
8FIZ|1|AA|G|450
*
8FIZ|1|AA|C|483
8FIZ|1|AA|G|484
8FIZ|1|AA|U|485
8FIZ|1|AA|U|486
8FIZ|1|AA|A|487
8FIZ|1|AA|C|488

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S4

Chain AO

30S ribosomal protein S16