IL_8FIZ_048

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8FIZ|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_048 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1255

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8FIZ|1|AA|U|1052
8FIZ|1|AA|G|1053
8FIZ|1|AA|C|1054
8FIZ|1|AA|A|1055
8FIZ|1|AA|U|1056
*
8FIZ|1|AA|A|1204
8FIZ|1|AA|U|1205
8FIZ|1|AA|G|1206

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S14

Chain AG

30S ribosomal protein S3

Chain AH

30S ribosomal protein S10

Chain AW

mRNA