3D structure

PDB id
8FIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAGC*GG
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FIZ_053 not in the Motif Atlas
Geometric match to IL_5W1H_001
Geometric discrepancy: 0.2218
The information below is about IL_5W1H_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_71421.1
Basepair signature
cWW-cWW
Number of instances in this motif group
27

Unit IDs

8FIZ|1|AA|C|1129
8FIZ|1|AA|A|1130
8FIZ|1|AA|G|1131
8FIZ|1|AA|C|1132
*
8FIZ|1|AA|G|1142
8FIZ|1|AA|G|1143

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AK
30S ribosomal protein S9

Coloring options:


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