IL_8FIZ_055

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_055 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.2028

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8FIZ|1|AA|C|1158
8FIZ|1|AA|U|1159
8FIZ|1|AA|G|1160
8FIZ|1|AA|C|1161
*
8FIZ|1|AA|G|1175
8FIZ|1|AA|A|1176
8FIZ|1|AA|G|1177
8FIZ|1|AA|G|1178
8FIZ|1|AA|A|1179
8FIZ|1|AA|A|1180
8FIZ|1|AA|G|1181

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AJ

30S ribosomal protein S2

Chain AK

30S ribosomal protein S9