IL_8FIZ_057

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_057 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.149

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8FIZ|1|AA|C|1259
8FIZ|1|AA|G|1260
8FIZ|1|AA|A|1261
8FIZ|1|AA|C|1262
8FIZ|1|AA|C|1263
*
8FIZ|1|AA|G|1272
8FIZ|1|AA|C|1273
8FIZ|1|AA|A|1274
8FIZ|1|AA|A|1275
8FIZ|1|AA|G|1276

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S19

Chain AF

30S ribosomal protein S14