IL_8FIZ_058

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_058 not in the Motif Atlas

Geometric match to IL_3R1C_032

Geometric discrepancy: 0.1517

The information below is about IL_3R1C_032

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_08424.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

68

Unit IDs

8FIZ|1|AA|G|1353
8FIZ|1|AA|U|1354
8FIZ|1|AA|G|1355
*
8FIZ|1|AA|C|1367
8FIZ|1|AA|A|1368
8FIZ|1|AA|C|1369

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S14

Chain AH

30S ribosomal protein S10

Chain AK

30S ribosomal protein S9