IL_8FIZ_060

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCCG*CGUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_060 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.3236

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FIZ|1|AA|G|1401
8FIZ|1|AA|C|1402
8FIZ|1|AA|C|1403
8FIZ|1|AA|C|1404
8FIZ|1|AA|G|1405
*
8FIZ|1|AA|C|1496
8FIZ|1|AA|G|1497
8FIZ|1|AA|U|1498
8FIZ|1|AA|A|1499
8FIZ|1|AA|A|1500
8FIZ|1|AA|C|1501

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AW

mRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BB

Transfer RNA; tRNA