IL_8FIZ_061

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_061 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.121

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8FIZ|1|AA|G|1405
8FIZ|1|AA|U|1406
8FIZ|1|AA|C|1407
*
8FIZ|1|AA|G|1494
8FIZ|1|AA|U|1495
8FIZ|1|AA|C|1496

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AW

mRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BB

Transfer RNA; tRNA