IL_8FIZ_068

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_068 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.112

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FIZ|1|BA|G|24
8FIZ|1|BA|U|25
8FIZ|1|BA|G|26
8FIZ|1|BA|G|27
8FIZ|1|BA|A|28
8FIZ|1|BA|U|29
8FIZ|1|BA|G|30
*
8FIZ|1|BA|C|510
8FIZ|1|BA|U|511
8FIZ|1|BA|G|512
8FIZ|1|BA|A|513
8FIZ|1|BA|A|514
8FIZ|1|BA|A|515
8FIZ|1|BA|C|516

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L32

Chain BX

50S ribosomal protein L20

Chain BZ

50S ribosomal protein L22