IL_8FIZ_076

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_076 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4332

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8FIZ|1|BA|C|274
8FIZ|1|BA|C|275
8FIZ|1|BA|U|276
8FIZ|1|BA|G|277
8FIZ|1|BA|A|278
8FIZ|1|BA|A|279
8FIZ|1|BA|U|280
8FIZ|1|BA|C|281
*
8FIZ|1|BA|G|359
8FIZ|1|BA|U|360
8FIZ|1|BA|G|361
8FIZ|1|BA|A|362
8FIZ|1|BA|G|363

Current chains

Chain BA

23S rRNA

Nearby chains