IL_8FIZ_078

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8FIZ|1|BA|A|504, 8FIZ|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_078 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0987

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8FIZ|1|BA|G|481
8FIZ|1|BA|A|482
8FIZ|1|BA|A|483
8FIZ|1|BA|C|484
*
8FIZ|1|BA|G|496
8FIZ|1|BA|A|497
8FIZ|1|BA|G|498
8FIZ|1|BA|U|499
8FIZ|1|BA|G|500
8FIZ|1|BA|A|501
8FIZ|1|BA|A|502
8FIZ|1|BA|A|503
8FIZ|1|BA|A|504
8FIZ|1|BA|A|505
8FIZ|1|BA|G|506
8FIZ|1|BA|A|507
8FIZ|1|BA|A|508
8FIZ|1|BA|C|509

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BZ

50S ribosomal protein L22

Chain DB

50S ribosomal protein L24