IL_8FIZ_109

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8FIZ|1|BA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_109 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1382

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

8FIZ|1|BA|C|1196
8FIZ|1|BA|G|1197
8FIZ|1|BA|U|1198
*
8FIZ|1|BA|A|1247
8FIZ|1|BA|G|1248
8FIZ|1|BA|U|1249
8FIZ|1|BA|G|1250

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BT

50S ribosomal protein L15

Chain BX

50S ribosomal protein L20