IL_8FIZ_110

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

8FIZ|1|BA|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_110 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.1337

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

8FIZ|1|BA|G|1202
8FIZ|1|BA|U|1203
8FIZ|1|BA|A|1204
8FIZ|1|BA|A|1205
8FIZ|1|BA|G|1206
*
8FIZ|1|BA|U|1240
8FIZ|1|BA|A|1241
8FIZ|1|BA|U|1242
8FIZ|1|BA|C|1243

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BT

50S ribosomal protein L15