IL_8FIZ_119

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_119 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1553

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8FIZ|1|BA|G|1430
8FIZ|1|BA|A|1431
8FIZ|1|BA|G|1432
*
8FIZ|1|BA|C|1561
8FIZ|1|BA|U|1562
8FIZ|1|BA|U|1563

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2