IL_8FIZ_122

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

8FIZ|1|BA|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_122 not in the Motif Atlas

Geometric match to IL_5TBW_146

Geometric discrepancy: 0.2333

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8FIZ|1|BA|G|1450
8FIZ|1|BA|C|1451
*
8FIZ|1|BA|G|1459
8FIZ|1|BA|U|1460
8FIZ|1|BA|C|1461

Current chains

Chain BA

23S rRNA

Nearby chains