IL_8FIZ_131

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

8FIZ|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_131 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.1335

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8FIZ|1|BA|A|1669
8FIZ|1|BA|C|1670
8FIZ|1|BA|U|1671
8FIZ|1|BA|A|1672
8FIZ|1|BA|G|1673
8FIZ|1|BA|G|1674
*
8FIZ|1|BA|C|1990
8FIZ|1|BA|U|1991
8FIZ|1|BA|G|1992
8FIZ|1|BA|U|1993

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BS

50S ribosomal protein L14