IL_8FIZ_132

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8FIZ|1|BA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_132 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.1

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8FIZ|1|BA|C|1686
8FIZ|1|BA|G|1687
8FIZ|1|BA|U|1688
8FIZ|1|BA|A|1689
8FIZ|1|BA|A|1690
8FIZ|1|BA|C|1691
*
8FIZ|1|BA|G|1696
8FIZ|1|BA|G|1697
8FIZ|1|BA|A|1698
8FIZ|1|BA|G|1699
8FIZ|1|BA|A|1700
8FIZ|1|BA|A|1701
8FIZ|1|BA|G|1702

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2