IL_8FIZ_142

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_142 not in the Motif Atlas

Geometric match to IL_7A0S_071

Geometric discrepancy: 0.0982

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

8FIZ|1|BA|G|1933
8FIZ|1|BA|C|1934
*
8FIZ|1|BA|G|1964
8FIZ|1|BA|C|1965
8FIZ|1|BA|A|1966
8FIZ|1|BA|C|1967

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

Transfer RNA; tRNA