IL_8FIZ_143

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

8FIZ|1|BA|A|1938, 8FIZ|1|BA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_143 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.3798

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

8FIZ|1|BA|C|1934
8FIZ|1|BA|G|1935
8FIZ|1|BA|A|1936
8FIZ|1|BA|A|1937
8FIZ|1|BA|A|1938
8FIZ|1|BA|U|1939
8FIZ|1|BA|U|1940
8FIZ|1|BA|C|1941
8FIZ|1|BA|C|1942
8FIZ|1|BA|U|1943
8FIZ|1|BA|U|1944
8FIZ|1|BA|G|1945
*
8FIZ|1|BA|C|1961
8FIZ|1|BA|C|1962
8FIZ|1|BA|U|1963
8FIZ|1|BA|G|1964

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2