IL_8FIZ_145

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8FIZ|1|BA|C|2055, 8FIZ|1|BA|U|2613, 8FIZ|1|BA|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_145 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.1785

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

8FIZ|1|BA|A|2054
8FIZ|1|BA|C|2055
8FIZ|1|BA|G|2056
*
8FIZ|1|BA|C|2612
8FIZ|1|BA|U|2613
8FIZ|1|BA|A|2614
8FIZ|1|BA|U|2615

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L32

Chain BZ

50S ribosomal protein L22