IL_8FIZ_147

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8FIZ|1|BA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_147 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.0901

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8FIZ|1|BA|U|2081
8FIZ|1|BA|A|2082
8FIZ|1|BA|G|2083
*
8FIZ|1|BA|U|2236
8FIZ|1|BA|G|2237
8FIZ|1|BA|G|2238
8FIZ|1|BA|G|2239

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2

Chain DE

50S ribosomal protein L28