IL_8FIZ_161

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

8FIZ|1|BA|A|2572, 8FIZ|1|BA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_161 not in the Motif Atlas

Homologous match to IL_7RQB_098

Geometric discrepancy: 0.1443

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8FIZ|1|BA|C|2512
8FIZ|1|BA|A|2513
*
8FIZ|1|BA|U|2571
8FIZ|1|BA|A|2572
8FIZ|1|BA|C|2573
8FIZ|1|BA|G|2574

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BR

50S ribosomal protein L13