IL_8FIZ_162

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

8FIZ|1|BA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_162 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1068

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8FIZ|1|BA|U|2522
8FIZ|1|BA|G|2523
*
8FIZ|1|BA|C|2540
8FIZ|1|BA|A|2541
8FIZ|1|BA|A|2542
8FIZ|1|BA|G|2543

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BP

50S ribosomal protein L36

Chain BR

50S ribosomal protein L13